PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Brast03G058200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 351aa    MW: 37869.4 Da    PI: 7.4025
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Brast03G058200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.72.8e-15244328383
                         EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFk 83 
                         k+lt+sdv + gr+vlpkk ae+   ++ ++ ++ l++ d     +W++k+++  ++ks++y+l   + eFvka+gL++gD +v++
  Brast03G058200.1.p 244 KELTKSDVANVGRIVLPKKDAEASlpQLCQRDPMILQMDDmVLPVTWKFKYRFwpNNKSRMYILD-STAEFVKAHGLQAGDALVIY 328
                         899******************99999777778888888885556*******99777777777777.9*****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-16241329IPR015300DNA-binding pseudobarrel domain
CDDcd100173.61E-21241339No hitNo description
Gene3DG3DSA:2.40.330.103.2E-21241336IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.586242344IPR003340B3 DNA binding domain
SMARTSM010193.8E-7242342IPR003340B3 DNA binding domain
PfamPF023626.9E-12244328IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGGGDGRSGA GSGAGGGHPH QFQYQALLAA VGTHNPNPNT LPFPLPPLNG NGPDAPANNA  60
ARQPPAPRGF ADWSAANSAF TSLAAQSTPA ASTAATTNAF HYSVSPCYAF WTHYMLNKSG  120
YSYYPPQHQE HPHPFCPDSQ QAKNTGSALS FGIDSFTSTS VAPNISLAPN GSAHMPPMEA  180
HISTKEPETS EDVPRVVRRK DGMETSNRGE DNCETVDTLP ELKQGHESCA TKFNSGEYQV  240
ILRKELTKSD VANVGRIVLP KKDAEASLPQ LCQRDPMILQ MDDMVLPVTW KFKYRFWPNN  300
KSRMYILDST AEFVKAHGLQ AGDALVIYKN PVPGKFIIRG EKAIQHPTNP *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3739021e-162AK373902.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3046N18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003573243.10.0PREDICTED: B3 domain-containing protein IDEF1-like
SwissprotQ6Z1Z31e-122IDEF1_ORYSJ; B3 domain-containing protein IDEF1
TrEMBLI1I0790.0I1I079_BRADI; Uncharacterized protein
STRINGBRADI3G12910.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113462831
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.17e-33B3 family protein